Intro

Hi! I am 蔡怡陞 Jason Tsai , an associate research fellow at Biodiversity Research Center, Academia Sinica, Taiwan.

This website contains the teaching slides that I taught every two years in NTNU and NTU, along with other things.

這是在師大還有台大開的 *次世代定序：理論及方法* or *GSB* 課程。所有資訊都可以在這邊找到。

Contents:

• 01. Course introduction
• 02. Lecture slides
  • GSB 2022 R practicals
  • Advanced Microbiology
  • TIGP Introduction to Genomics / (NGS)
  • Example Dataset (v2018 ; not updated yet)
  • TIGP B2
  • TIGP Microbial Diversity and Ecology
  • 長庚 2021
• 03. Statistics of the course
• 04. Ecology Master Course Genome skimming
  • Step 1: Which species to choose/download?
  • Step 2: Upload the sequences to the server
  • Login to the server and start understanding your sequence data
  • Search for putative mitogenome sequences
  • Assembly
  • Annotation using MITOS online
  • Alternative mitogenome annotation using MitoZ
  • Do you want to try other species?
  • Reference of the programs used
• 05. Links to good references
  • Lecture slides
  • Good reviews / papers / videos

Note

This module will be taught in English